NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306922_10117161

Scaffold Ga0306922_10117161


Overview

Basic Information
Taxon OID3300032001 Open in IMG/M
Scaffold IDGa0306922_10117161 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2830
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003243Metagenome / Metatranscriptome498Y
F020965Metagenome / Metatranscriptome221Y
F071862Metagenome121N

Sequences

Protein IDFamilyRBSSequence
Ga0306922_101171611F003243GGAMLAPLLGYFFCMVTVLTAVVVALTSLSSISTIGNGRHYPRPPVIGRTVMVETQRHSPPVAKESSPAKSVAKEASPAKDVSSVVATAADTKKSKHHKPKVFARQRDNYGYWNARGYAQRDFFF
Ga0306922_101171612F020965GAGMKSPLVIVLVAVVLVTVGTLAVMNNACKSSQHAWCAPTSSVRQHIKTG
Ga0306922_101171615F071862GGAGVAGAWRTIARKATPAVLYWFVLSLITFLGISAVVKIEATRTRLSVVVAVVVVAFSAAYFLERLLRDYMRTGIQPNGEPSDVTGSLPKWLKKGERRAEPRTAFVTPAVNALSFWEDNWLSLAQSPKLQALVAWQPKLINKDEVRRIAASIAKLPELSLKTAA
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