NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306922_10469077

Scaffold Ga0306922_10469077


Overview

Basic Information
Taxon OID3300032001 Open in IMG/M
Scaffold IDGa0306922_10469077 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1344
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028208Metagenome / Metatranscriptome192Y
F035648Metagenome171Y

Sequences

Protein IDFamilyRBSSequence
Ga0306922_104690771F028208N/AKRSIDKGWPRKKPDEAEVLSWDRSILRSTGMKIDGDLAVIDADVADASLVAALADALDERFPELFVHGLVRHAGGPKEAWIARVDEAFRRLASRRWYRGADPDDPAVPKHMVECFGSLRTRQFAIDGPHARNQAGEVISTYRFAGGASPATTPRAWLPALPKAAYALACDLFDGIAAAAGLTAIKEARGGRGGATPRVFELDADTVIETRDHGVMTVAELEHFLRKRHARGGAATLRCSGRFHDRTRVRTDSHLINWGRYGLGIYDTMTETTWHRRERAPSARFEFLGQLRARNPFR
Ga0306922_104690772F035648AGGAMNEHCAPEANRNTFDGDAISRADREFLASLGDHPLVRHPLYSVPPPPRPNYDGCTTIDERAEAQRACFPAALDWMLVNYAYYTGAFIGKGGIISLVDGEICSIASLRSFMQPYAIVEEGPRGGLKKTSVVDVWMMHPQRAQIDKVQTRPDR
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