NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306922_10613898

Scaffold Ga0306922_10613898


Overview

Basic Information
Taxon OID3300032001 Open in IMG/M
Scaffold IDGa0306922_10613898 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1151
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008409Metagenome333Y
F067323Metagenome / Metatranscriptome125N

Sequences

Protein IDFamilyRBSSequence
Ga0306922_106138981F067323N/AMRTNLLIGAAVLLMATSAARAEDLDWGRLHTETVALYGECDFDVSIAGRERLRVSSRCSRDGHTTFAADDYLRYTEYKNRQLHPEGIKICPRPVRGHDVERVDRRTFTVFTRCEETGEARGAVFQLEGDTIHIYNNANF
Ga0306922_106138982F008409GAGMWQLIAIVLSAVVLFYLGAFYLTVAAWLNAIGHLFRGNFIRASIWFSIGCGMLFWWTEQDIDFDTWLRGSAAIVCLGALGTLARFYNRHRRAAQTVPPLEPAPFEPAPVVLNINIKLDTSPHADRRAVHDDLAALASALRGAIGTEHGPRRIPGPTVN
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