NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307411_10678633

Scaffold Ga0307411_10678633


Overview

Basic Information
Taxon OID3300032005 Open in IMG/M
Scaffold IDGa0307411_10678633 Open in IMG/M
Source Dataset NameMaize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)895
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Maize Rhizosphere Microbial Communities From Greenhouse At Uc Davis, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.5Long. (o)-121.7Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F062509Metagenome130Y
F083819Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0307411_106786331F062509N/AQGMTDGENHRDLLTRLSTALAITEAAYLEARRRRNL
Ga0307411_106786333F083819GGAMRASEEQPKVRRRHIGPFLVAGALIGLLLIAFILSLAEHKLPELALTLTIYLFTTTLAVFVIGRMLAWRERRRWNAAKDWLHMILLETIDDLLKELLPAAVPREGIETDEEATVYEVVGERIHFGETVAYSPLQLLVSPGEKDLQSHIFWYAGELGAPRYAELARAALSDARARVR

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