NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310344_10072991

Scaffold Ga0310344_10072991


Overview

Basic Information
Taxon OID3300032006 Open in IMG/M
Scaffold IDGa0310344_10072991 Open in IMG/M
Source Dataset NameMarine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-200_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2816
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Sampling Location
Location NamePacific Ocean: North Pacific Subtropical Gyre
CoordinatesLat. (o)22.7656Long. (o)-158.2256Alt. (m)Depth (m)200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001066Metagenome / Metatranscriptome788Y
F064085Metagenome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0310344_100729913F001066N/AMDKKDDLFKIKPIGNKDIVVEDKRKLVSPFNSAKHFKAANLPALCDQCVYRSIADGGNGKCPKYEAGAVCAIREDFVKFINELDTRNPEDLKEILDMIAKLSFENVLMALTQSKLDGNIPDRNTKSEISTLLNIVKAINELSSKVTVTEQKEYTKEGDISNIFRQIKAQKNGDPDV
Ga0310344_100729915F064085GAGGMADITIVASGTCAECGHSQKDHEGNTVCDVEGCDCTNIGSY
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