NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0318562_10120190

Scaffold Ga0318562_10120190


Overview

Basic Information
Taxon OID3300032008 Open in IMG/M
Scaffold IDGa0318562_10120190 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1501
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006905Metagenome / Metatranscriptome362Y
F014996Metagenome / Metatranscriptome258Y

Sequences

Protein IDFamilyRBSSequence
Ga0318562_101201903F014996N/AVATGANAVHADIEALKGFHEALVRFRYAQRGVAERGGDQIEMTRASLAAKASRWQARLEQCQAELAACRAADGEQAADCSAYVRAVEQTGERLEHVRRWQQRVDDEAGEFGGSAGAYLDLLEVDLPRAESRLLAIITSLEAARRVPAGET
Ga0318562_101201905F006905N/AVLLEVPEDVPDRNREVNRFLPPLAASVHAIMRDQGIDIPYSSRVEHIATGGVARYPDIVKLSLDEIAAEFEGTCHQPGAL
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.