NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318563_10347085

Scaffold Ga0318563_10347085


Overview

Basic Information
Taxon OID3300032009 Open in IMG/M
Scaffold IDGa0318563_10347085 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)803
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005163Metagenome / Metatranscriptome410Y
F063046Metagenome / Metatranscriptome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0318563_103470851F063046AGGAGGVSKASIAAVLLALGVLSLQEGTNAMVVPPSGLQPASATPAIAETVALRKDRTVTRHVVVRHRGSHVR
Ga0318563_103470852F005163N/AGLKAAGKGGEEDTARKAAEGTAQQIAKPEIYWLDSAYRRSDGALIQEQREFLRNKGDPRFLPPFSSLAECEAEAQYRMNWRGGRDSPVFERADCRPTAITRKMLNAVRKDYCWDHPKKPAWERPECRAAVEGLTNILERELKAK
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