NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318569_10059110

Scaffold Ga0318569_10059110


Overview

Basic Information
Taxon OID3300032010 Open in IMG/M
Scaffold IDGa0318569_10059110 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1675
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009474Metagenome / Metatranscriptome317Y
F039406Metagenome / Metatranscriptome164N

Sequences

Protein IDFamilyRBSSequence
Ga0318569_100591102F009474GGAGGVIFMRRLRVIVALGALLSLLGGVVTASPALAGRGPKWQPPGGPPFTLLASFCGFKLRVAYPVNHEYTRVLHHADGSTTFLFTGAVTASYTNLQTGKTITVPENGPGKATIGADGSITEVHTGRNGPSILSPADAKRFGLPTVSVTAGKLAFSVTAPPRVITSLSLHGHVLVNVCAALT
Ga0318569_100591103F039406N/ANDSWTYGIRNRMEEFTGRDCGHVDSNGWCTHRGGSVRYLADGTALIRGKLASAYVTYYDHRYSLSPLAHYQVKPCSKSAQLSLGGPAVSVPNWPAFIKAMLRCNRATVTRHARIGNVPVIVISGSIDIPLPKAYGRSVRETRVRVDYTLYVDVKTYLPLRAYGSTKTYGGAGGPTISSYVTNLRWLPPTPANRAKALVTIPHGYTQWTGSPGNQ
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