NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310906_10383908

Scaffold Ga0310906_10383908


Overview

Basic Information
Taxon OID3300032013 Open in IMG/M
Scaffold IDGa0310906_10383908 Open in IMG/M
Source Dataset NameLab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)923
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Soil Microbial Communities From West Virginia University Organic Research Farm, Morgantown, Wv, United States

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6475Long. (o)-79.9369Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024334Metagenome206Y
F062528Metagenome / Metatranscriptome130N

Sequences

Protein IDFamilyRBSSequence
Ga0310906_103839081F024334GGAGMFKKVGTLPVKTRLPFGAWVLAGLVTLFSLVTSLTQVSSPMVEATKPVTAHYASMTDLLNLIG
Ga0310906_103839082F062528N/AMRIPNQVRFLGKRRWPEFDCSEAPLPDHFILQLWMLDGAERRYQLAKGWLCGWQKTHLEQLRKILIARR

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