NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310899_10102354

Scaffold Ga0310899_10102354


Overview

Basic Information
Taxon OID3300032017 Open in IMG/M
Scaffold IDGa0310899_10102354 Open in IMG/M
Source Dataset NameLab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1158
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Soil Microbial Communities From West Virginia University Organic Research Farm, Morgantown, Wv, United States

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6475Long. (o)-79.9369Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011966Metagenome / Metatranscriptome285Y

Sequences

Protein IDFamilyRBSSequence
Ga0310899_101023542F011966AGGAGGMVDKPVDAEGARSDLGFGNQYFDRWFKQKSSEQKEETFSLVLKYIGEARKKDPNVSLEVKSEKGEVKQVTPDSLVAAMYLAHGSYEAFNDQTAAGRLRGREHLHKSIAILPMPVAFADLARAYIAEDDRAKALEIANTGQQQYPESFEIRQVMDMMKSDEKLGAKPTNRRVVVFVLGFLLFLGGWVVLWVADAMRGAQPMSRSIFIIAGAGWVLGILCFFLAMKSPRQE
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