NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315324_10073658

Scaffold Ga0315324_10073658


Overview

Basic Information
Taxon OID3300032019 Open in IMG/M
Scaffold IDGa0315324_10073658 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 21515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1277
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001334Metagenome / Metatranscriptome720Y
F003285Metagenome / Metatranscriptome496Y

Sequences

Protein IDFamilyRBSSequence
Ga0315324_100736582F003285GAGGMPDQESFLQLKSEIQTLKIKDEYRSKELDALMSKLDDTSSKLNTLSDNISRLLAGQETHKTNDNEVRDELKILHTRIGDLHDKCSEMIDKTETRVSSDISLLYKKVDSLEKWRWITIGVATAIAWLLTNIIPKFLNN
Ga0315324_100736583F001334N/AMKFKEYLQLNADDSIEQVMNGEWILKSRTTWKATDDEDNKLEIHNDGHDTELQGESWSVHTNTFAPKAFAFFCKQFIKEVKPSEVTHARSRIFPTT
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