NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318507_10043923

Scaffold Ga0318507_10043923


Overview

Basic Information
Taxon OID3300032025 Open in IMG/M
Scaffold IDGa0318507_10043923 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1731
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000859Metagenome / Metatranscriptome858Y
F004709Metagenome / Metatranscriptome427Y

Sequences

Protein IDFamilyRBSSequence
Ga0318507_100439231F000859GGAGMPREDTRSDRSTDPAGSEFFNTLQEIRREWMARATAEVELSLKLSKKLTDAHSVPDAVAAYQEWLNDEMGARAEDARLLMSNGQKFMDTTSRFLSRGWTNAGMTT
Ga0318507_100439233F004709GGAMQQKQLQSGLSGHERSRMAEPEVEAAWRAEFERSGVKELRDALSGDGFTDELKRQAALRWLGDEVEARRLREEKTHHYVRGTLLIVVAAVIAGLIAVGLAQLR
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