NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308402_1001532

Scaffold Ga0308402_1001532


Overview

Basic Information
Taxon OID3300032033 Open in IMG/M
Scaffold IDGa0308402_1001532 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060913_OS-M2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6388
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007404Metagenome / Metatranscriptome351Y
F012577Metagenome / Metatranscriptome279Y
F016100Metagenome / Metatranscriptome249Y
F072382Metagenome / Metatranscriptome121N

Sequences

Protein IDFamilyRBSSequence
Ga0308402_10015321F012577N/ALGFGALQRDARISVVQNMTDMTRWKPVGAGFMTGSGYDSRGDLWEYEVVEVIGFPHVRIRTKKAFIITNATLFFIAYLFDQPERYVTVRTNESIIVLPAIVTGLADGVWVAPVTAIPQPNAYTLTLGAFTGLSSTGTVTATTCYGWVIGVRASGVETIAGTTSVTFRAIVNLSDIFGINPALTYTDLGVLGWCCDVYLPSQTNIKIEKPDANLREIIEQSDDSFVQVRYPRKRFLRDRPRPVIDFRTDSTLTWRFPDTMRAVDISKAPNRVYGQYRGYWTDHLTAPSVILSIEYRRQMLASRNASVGEYGSKALAETRRDEAAIALDRQIAPLTVELDNSRYELMTREGVTVPNWAADVSDYVIVPGYYRKAKITARTITRERTTYTVSFNPDDFVTALR
Ga0308402_10015324F007404GGAGGVDIVEIFQLLAAGHAGLTATDYLWNAVFGAVGAATAYLADKEGVVLLPRYDAEQHSVELGALGRVLVGAGAGTLVGYSGYVPFIAGVVAPTLLPALIDKIAWFVERRRK
Ga0308402_10015326F072382AGGAGGMKTVYHTKDVYFPPFSIKIEPERGTWFADVYVRYAENPSLDTKYNAYIGANDFLSGTPIPAVDRRDVAKAIESLVFDYGLVGLVIYPTREGWGVNITICSEIENQYLHGEGKTPADAIRNSNYPPPLRNV
Ga0308402_10015327F016100AGGAGGMIKSVKVERFKDCEELVRVLSRSEACPATNKDIIRPLNYELLIGSHLPEPDWRRLGALVVALFRSFAVVDVEIWQTDAGVWVADALVDFGDRRRLRKGEGDTPLQAVIELITDIQRY
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