NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308402_1006133

Scaffold Ga0308402_1006133


Overview

Basic Information
Taxon OID3300032033 Open in IMG/M
Scaffold IDGa0308402_1006133 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060913_OS-M2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2974
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005028Metagenome / Metatranscriptome414Y
F008499Metagenome / Metatranscriptome332Y
F018115Metagenome / Metatranscriptome236Y
F025895Metagenome / Metatranscriptome199Y

Sequences

Protein IDFamilyRBSSequence
Ga0308402_10061332F025895GGTGGMSDVIAWIIAGGVILALVNSNVADGLLSALDLSDNLKRAADWASGVRGFPAGVAAICFFVMAYVFGALAYRYDLVPTWRFMQPIANDVLATGAEWLTLFVVFLTLLPTLIEIAAAKLAQRDVRMLQWMVYFFIFFDLVTDYTEAVALVDIWQRSGLFAPLPDVIEGAAAVLVKVGWTFAASFAFEFLAVLFGATTLLLAANVRAASGGGGGR
Ga0308402_10061334F005028AGGAGMCDDDLRNNDLRAAMSFFAARLRGVDVTEAGLRRWTRHKLRNDTQAVAELMLTVGYRPTFIRYFLRYHVPTLRESAAVGETYTDPDATDAHLGLCWRLDEEVLTVLSDLHAAAKRLRQPYRDLAAVCLKWGYVHETVVQLLVKELERKHRNVVED
Ga0308402_10061335F018115AGGAGMNDAEERFVRWYAHLPPDAPLDRHAARALLRRALADREALAEYLLEHECAPSLLGEFINRHWNDALSDAARGASLRLASRTLRALDYLEERDRWATLEWLKRGVVPSARILRRLCEEIDD
Ga0308402_10061336F008499N/AMKSRSEPRWKRKEREALKALQALFGRVSDPSLARLLTPTGRVGHLTRFGVDGFVGDNPGFAVEVKARRKMLTKPTLDALLQTIDRAARYERIPLFVLVFGDDVPTRTENGARVDREWVMMPRRVLDELVGKERKDE
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