NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308402_1015152

Scaffold Ga0308402_1015152


Overview

Basic Information
Taxon OID3300032033 Open in IMG/M
Scaffold IDGa0308402_1015152 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060913_OS-M2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1754
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006418Metagenome / Metatranscriptome373Y
F010840Metagenome / Metatranscriptome298Y
F051735Metagenome / Metatranscriptome143N

Sequences

Protein IDFamilyRBSSequence
Ga0308402_10151523F010840AGGAGGVNLPFSQPLDKVTFGALAAATVIILTWALREFAGIDLPAEVQSALAVIFGYVVSYHIPLTEAEAEAIARKYYRNYK
Ga0308402_10151524F051735AGGAGGMFRDVTIINGPVPKDGVADYERLRIKARPLGRPYTWDNGRAWNPHTTNGGFILVFECEDGAVYVQEIEWEVDPHPAADPSPRTYYYYERYNSLAEARAGGRGWLIEYALGNE
Ga0308402_10151525F006418N/ARRSAPAPRPVREIVIDSGDDFKIIFDRESKDYAVEYRGEPVGWRAFVEDARRLVEQLRYEDARRGE
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