NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308407_1001835

Scaffold Ga0308407_1001835


Overview

Basic Information
Taxon OID3300032034 Open in IMG/M
Scaffold IDGa0308407_1001835 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20060911_MSe2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10385
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (92.86%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028051Metagenome / Metatranscriptome193Y
F037460Metagenome / Metatranscriptome168N
F052924Metagenome142N
F069505Metagenome124N
F087843Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0308407_10018351F037460AGGAGGMPQESKISDGIAFFDAAVRLLRKGWPPMPPLITGYVNYIRYGSVYWRCANGPLVLRWAEKIRQRQDWYGYAEPLLAYFFPCHPFRRPEWRPPEGILEGENPSNAIGWPAKALVLEWKRAARKRQPLWHPAHYVVYYRHFDNRVREWNAFYLYLAIFLRRELAQLQAAGPTEWLLLDGPAPIDSLSPAPHFHLAPGLQASWQDWLRAVRPVAKPYHSRRHKCLLA
Ga0308407_100183512F087843AGGMHTGRAYTNVYDIGTDWQLIAGYSEYRSFLLVSVQEGEGCYLYFGSEPASQPTLPVQGVRLNANAPYIAFTYPPVQLTYGPVWARCHGPPNETEARVSVIEVSHPPECRGHIH
Ga0308407_100183513F028051AGGAGGLDSSGRSSRWSIQAPNALTTERQQLTVTELLRLIRGLPQQRPSQTSLARRYNVELRTVVIDGPPGRYVVLRADPRRFAFYLWGPGFGSYYFSPYEFDDSGAGPFSASATSPLRITEESHPGLPRLEWKHLHTAGGTVRFYLIEVLDTAV
Ga0308407_10018355F069505AGGAGMQWCSELAYALRVAQRQCDEHVVRNALRAKFPAMPAEEIEGCADVACKAVTAARLLSKAETLDEAVQAFRAAPELDDLPQPGADIFAQVYSIFENEKSRLYYSRVFGESLPGQSEDEKVVHAFLSFLEALATALERGVGG
Ga0308407_10018356F052924GGAGMAKAQYKTEEERELKQLSIGLSYLTSEIRDFTRWVRTAPDPAGKVQEYRARLDRIFDRIGQLRETDPNRVAAMERRINAARQDLDNALQQAARGVEEPKSFFRRLYDGITRVTITVLQTLGGVVGWTFRRRGGP
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