NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308407_1001958

Scaffold Ga0308407_1001958


Overview

Basic Information
Taxon OID3300032034 Open in IMG/M
Scaffold IDGa0308407_1001958 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20060911_MSe2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9808
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (78.95%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002372Metagenome / Metatranscriptome566Y
F002795Metagenome / Metatranscriptome529Y
F004024Metagenome / Metatranscriptome456N
F012676Metagenome / Metatranscriptome278Y
F098761Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0308407_10019581F098761N/AILWGKRGVVCVYTSPSFATVDVRLRRLTQYVYVTAGRFRRSGADYAVYRWHEHPYADDALVERYRFALRLSDWYGVYDTLYGAAAGDTLAILPAPAPAPAPARRRA
Ga0308407_100195819F004024AGGAGGMHSERDYLRQPSLNDDDMMFLDARATLAAALARAVVGYSDSRVRALAWLSIATPRLYDRIAPLIESSAIRQSPGASRTLRDALRALSLE
Ga0308407_10019583F002795AGGAGGMVAGGLVLRGMVASYREFISRKDGKTYRVVTVYGDLVAGENVLCVVDGYDVFVDSSDYSRGEMVELPARLQFVRDGSGRPTIRLYVDEGVR
Ga0308407_10019584F002372AGGAGMPTRREDALWQIVHRKSSHLRALLDALDDVDMSIAYELHYYPYAIVELLRVRDDAPPIVLRSAYVSANRQWERHSEFTLRVVEAALQLVHEYRADPSAGGSDSWA
Ga0308407_10019588F012676AGGAGGMSTTIKIAAGWDGNPKSLTSPEHNWIRFLEAQGIAYAAYLDEPAGWRLVVHDERRFTRALHALRKYGVYGICEWTYDIH
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