NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0308407_1002185

Scaffold Ga0308407_1002185


Overview

Basic Information
Taxon OID3300032034 Open in IMG/M
Scaffold IDGa0308407_1002185 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20060911_MSe2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8948
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002179Metagenome / Metatranscriptome586Y
F004170Metagenome / Metatranscriptome450Y
F012542Metagenome / Metatranscriptome279Y

Sequences

Protein IDFamilyRBSSequence
Ga0308407_10021851F012542N/AAWVRFWEERYRTPGSEVDGLIAAAALLHLAEAGWLPSGPSPERLREEFRQRVQQVQPWTTSYHEQSVRRMLLASVPADASAPERLRQDIKAWLELTHRNVPPEKREAVWNMLIAWQREGILERCGISLVPDLARTLEWERSDYVLLTMAGYIPGAVEVSAHPKAVQAVVARWEALSRNDDWRIRRVAWVGRWNFLRAGALTTEEQGRFGADDVEAIGSEKAWDVLLTLAQITPRGTFPLAIWTRRLSDQDDWRRLAAHLAIHGWLVEVMEGASGEWRVASGSSLLATRYSLLAITRRQVRQALRRAGQEGMGVGTVAPLVNLPPEVLPDFRRLHEIETALAAGQMPPPDAGAGNRPIPRTVPARLPEAHPRRGPTGITDRTTGRTAGSEPPARHPFPEAVRYE
Ga0308407_10021852F004170GGAGGMSDPSLFVSPLVRQAARNLHRLEVLTANPIWTDMSCRWNFWRTRRMMAMTPDEAAAWLPALAFAVSRENNPDVLAELARQPLPEPLPPEAIPWRDRLIQVWEQYPVAIAWEQYPAAIVWVETIRLAALVRLDRRAERLPEWLTEARRARDLWWYDRDLRLAALAGWRPRPGDGPPHGDKAEAAQAWVRFWEERYRTSRSELNVLVAAAVLLHLAEAGWLPSGPSPEGLREEFRQRMQQVQQWPVSYHERSVLGMLLSSVPADASAPERRQQDIRKWLELIHKNVRWEERELVWEMLAAWQREGILERGGISLVPDLAQTLEWEDYSDVLRAMAGYVPGLAEVRAHPEAMRAVVARWEALSRNDDGGIRQAAWVTRWNLLRAGVLTAEEQGRFGSDYVKAIGSKDDRELLALAQITPPGTFPLTTWAGRLSDQGDRRRLARRLAAQLAIHGWLVEVMEGASGEWRVASGSSLLATRYSLLATHRRQVRQALRRAGQEGTDAGTVTPFVNLPPDVLPDFRRLREIETALAAGQMPPPATAAGTGNRPAPCTVPARLPETQPRRGPPGNTDRAAGAEPPVRHPFPETIRHE
Ga0308407_10021855F004170GGAGGMSNPSLFASPLVRQAARNLHTVEWLSENNTWSYDWFCRRNFWRTRRLMAMTPDEAAAWLPALAFAVSRENDPYILVELVRRPLPEPLPPEALPWRDRLIRSWEQYRPATAWEKNIRLAALVRLDRRVERLPEWLREARQTPDLGWYDRPLCLAALAGWRPRPGDGPPHGDKAEAAQAWVRFWEERYRTPGSGLEGLIAAAALLHLAEGGWLPSGPSPEQLRAEFRRRVPQYLISYQDRSVFRMLLSSVPADASAPERLRQDIKAWLELTHRNVQWEKREAVWDMFAAWQRESVLERSGRGRLPEPPRLLPDLARTLEWERNDYVLLMMAGYIPGAVEVSAHPEAARAVVARWEALSRNDDSQIRQAAWVARWNFLRAGVLTAEEQTRFGADYKEAIGAEKSRAVLVALVQIQPPGTFPLAIWTRRLSDQDDRYRLAAHLAIHDWLVEVAGGGQRRQVRQVLRRAGQEDAGNRPVAPFVNLPPEVWPDFRRLREIETALAAGQMPPPDAAAENRATPRAVPARLPEAHPRTGPPGITDRTAGRTAGSEPPARHPFPEVIRHE
Ga0308407_10021856F002179GGAGGMSDPSLFASPLARQAARNLHTVEWLSGNDTWRSAWSCRWYFWRTRRMMARTPDEAAAWLPALAFAVSCEKDADVLAELARQPLPEPLPSEALPWCAALIRSWKRQRTATPWGKTVRLAALVRLDRRVERLPEWLREARRALDLAPKNQRPRLSALAGWRPRPGDSPPHGDKAEAAQAWVRFWEERYRTPDSELEGLIATAALLHLAEAGWLPSGPSPERLREEFRQRVRQCPASCDERSVLRMLLASVPADASAPERRR
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.