NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308407_1003817

Scaffold Ga0308407_1003817


Overview

Basic Information
Taxon OID3300032034 Open in IMG/M
Scaffold IDGa0308407_1003817 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20060911_MSe2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5615
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000642Metagenome / Metatranscriptome965Y
F002978Metagenome / Metatranscriptome516Y
F012676Metagenome / Metatranscriptome278Y

Sequences

Protein IDFamilyRBSSequence
Ga0308407_10038171F002978GAGMRDWRVTIVPWADRRLWFVQARRGRRVVWGVVYDAGDPDSVALARRAIATLRAAGADCSSLPSPLPGSPAPGA
Ga0308407_100381710F012676GAGGMNSIKIAAGWDGNPKSLTSPEHNWIRFLEAQGIAYAAYLDEPAGWRLVVHDERRFTRALHALRKYGVYGICEWTYDIH
Ga0308407_10038172F000642AGGAGVQEIGIALALCAVAAAVWYMRRREAGAGRVRGWLLLYDDVGGWRVLPASYGDAGVVADGVTYPASLPALRVGRELVWIARCDAAALIEHRALERARESAALASLWRGGGQWIDFLRVAGVVLPAAFAYFTWAQVSALQSLVAQILALVGK
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