NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308407_1007898

Scaffold Ga0308407_1007898


Overview

Basic Information
Taxon OID3300032034 Open in IMG/M
Scaffold IDGa0308407_1007898 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20060911_MSe2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3321
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013092Metagenome / Metatranscriptome274N
F022362Metagenome / Metatranscriptome214N

Sequences

Protein IDFamilyRBSSequence
Ga0308407_10078982F013092GAGMNATLDVFFKTLLRSRGVRLRLPNGTEIDAVVARRDSQSVSLGGQVAADTTTQCFVVRASDLPSGYWPRVADEIVNVATSQRYIVVRATGGAHATTSSDPYGFLVRIWTRLAS
Ga0308407_10078984F022362GGAMIANLLDAVVDALNGPPLAASVAASKTWAHYWVLARETPDVCVVTFVRSEREQLSRTKFWFVFDVEVVRARPYTDQASIETVVNDVHSIASRLTDNMILERNNITYMLRSVLFSDPLYEIEEVFDESAFVRASVIARYAVSESL
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