NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308407_1012126

Scaffold Ga0308407_1012126


Overview

Basic Information
Taxon OID3300032034 Open in IMG/M
Scaffold IDGa0308407_1012126 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20060911_MSe2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2487
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F056952Metagenome137N
F058499Metagenome135Y
F089597Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0308407_10121261F056952AGGAGMKRRPSYRLYDVFGNVVYTSYKFDRVIKKLQQSLVKPIIYSAQGRRHVVFYLENGVVKCLIGNFGESRKSVEERVIRLFRASDIARRIRRHV
Ga0308407_10121262F089597AGGAGGMPRRLSWDEVASIIDREAVERYGQYLRGVVEGETYVPKATTTPSLVNRSIVLGVIYDWCRRRYRHRPLPATIRAFSWAARYCYPFHPVFARLGIGSEDVVEALEWIANDSYSLRFAPATYGVTIVCEHRNGDRRERHYFAPVPLVAPGIDDPTAVPFRLRMATQLVMQAALRAICVAEDDGSYDEIAIRITVRDLLEVAAPLVTPG
Ga0308407_10121264F058499GAGGMPSPLPRYERAYAELLSRYLVGSLAKYSDLAGLRLDAEGVFHLVVPNRHGDLVLYSCPHLDGRVVREDRIPGQRISLRAAINRDGWDVAVWEERVLLENQFATSEITLPS
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