NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310911_10078257

Scaffold Ga0310911_10078257


Overview

Basic Information
Taxon OID3300032035 Open in IMG/M
Scaffold IDGa0310911_10078257 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1778
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023920Metagenome208Y
F028208Metagenome / Metatranscriptome192Y

Sequences

Protein IDFamilyRBSSequence
Ga0310911_100782572F028208GGAGMQARTAFRLAMLKNGFQPLLNDCKRPIEKGWPKQIVDEAEVRSWDRSALLSTGMKLDGDLAVIDADITEASLIEALASALGARFPALFEHGLVRHAGGVKEAWIARVDEPFRRLASRRWYRGNDPDDPAAVKHLVECFGSLGTRQFAVDGPHARNGRGEVVSIYRFAGGISPAMTPRASLPMLPKAAYEQACDLFDEIAAAAGLAVVKGGGRGEAELRRFELDADTEIETRDHGVMTVAELERLVRKQHPRDLRCSGTFHDPTRVRTDSHLINWGRHGLGIWDAMTETTWHRRERAPSARFEFLGQLMERSPFQ
Ga0310911_100782573F023920AGGAGMSAFDGEAISKADREFLDGLSNHPLMRHPLYSVPPPPRPNYSGCTTIAEKTAKQIACFPAALDWMLINYAYYADAFMGKGGIISQVDGKMGTIASLRGFMQPYAIVEEGPRGGLKKTSVVDVWMSHPLRAHIDEVQTRFDRSRPTFEEEGVMVYNRYWPPVHPTSGGEIETFKAFFARLI
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