NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310911_10490391

Scaffold Ga0310911_10490391


Overview

Basic Information
Taxon OID3300032035 Open in IMG/M
Scaffold IDGa0310911_10490391 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)712
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008262Metagenome / Metatranscriptome336Y
F035648Metagenome171Y

Sequences

Protein IDFamilyRBSSequence
Ga0310911_104903911F035648AGGAMNEHRTFEANRNTFDGDAISRADREFLASLSDHPLARHPLYSVPPPPRPNYEGCTTIADRQAAQEACFPAALDWMLVNYAYYADAFMGKGGIISLVDGKIGTIGSLKGFMQLYTIVEEGPRGGLKKMSVVDVWIS
Ga0310911_104903912F008262N/AGATPRVFELDADTEIETQDYGAMTVAELERFMRARQATTTLRCSGSFHDRTRARTDSHLINWGRYGLGIYDTMTETTWHRRERAPSARFEFLGQLQARNPFR
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