NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326508_1098653

Scaffold Ga0326508_1098653


Overview

Basic Information
Taxon OID3300032037 Open in IMG/M
Scaffold IDGa0326508_1098653 Open in IMG/M
Source Dataset NameMetatranscriptome of bovine rumen microbial communities from UC Davis, California, United States - 1_2617_0518 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)903
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida → Oxytrichidae → Oxytrichinae → Oxytricha → Oxytricha trifallax(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.5357Long. (o)-121.7593Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051620Metagenome / Metatranscriptome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0326508_10986531F051620N/AMILPDQILNSTTAQFTNPLAPGIPVINPSQLPNQAIPAETGVQPTQEKRHRRSKHEQEGRTFFCSVPNCGKSFLSQPALNNHIKTKHSELLEGKPKRGRGRPRKYPPKSPGDFETTKYEIFFKNPERTAKEGTTIDVEKVVTKTFDFIYNGNYSSKLFSHPKSYEENPILKNLVANTPAPEKPKNLKTCDEVFYEYLYSFKDKTNEKYFELLLKFVLLFRECYDNSKTKDLPGDQKKAVTDNISPEGLPDLCNEFYGEFMEPNNFFDLDEQFEKNEIIEIIQHFCIWLFKNEYTKSKLSL
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