NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318559_10088780

Scaffold Ga0318559_10088780


Overview

Basic Information
Taxon OID3300032039 Open in IMG/M
Scaffold IDGa0318559_10088780 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1357
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023920Metagenome208Y
F028208Metagenome / Metatranscriptome192Y

Sequences

Protein IDFamilyRBSSequence
Ga0318559_100887801F028208N/APLLNDCKRPIEKGWPKQIVDEAEVRSWDRSALLSTGMKLDGDLAVIDADITEASLIEALASALGARFPALFEHGLVRHAGGVKEAWIARVDEPFRRLASRRWYRGNDPDDPAAVKHLVECFGSLGTRQFAVDGPHARNGRGEVVSIYRFAGGISPAMTPRASLPMLPKAAYEQACDLFDEIAAAAGLAVVKGGGRGEAELRRFELDADTEIETRDHGVMTVAELERLVRKQHPRDLRCSGTFHDPTRVRTDSHLINWGRHGLGIWDAMTETTWHRRERAPSARFEFLGQLMERSPFQ
Ga0318559_100887802F023920AGGAGMSAFDGEAISKADREFLDGLSNHPLMRHPLYSVPPPPRPNYSGCTTIAEKTAKQIACFPAALDWMLINYAYYADAFMGKGGIISQVDGKMGTIASLRGFMQPYAIVEEGPRGGLKKTSVVDVWMSHPLRAHIDEVQTRFDRPRPTFEEEGVVVYN
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