NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318559_10161782

Scaffold Ga0318559_10161782


Overview

Basic Information
Taxon OID3300032039 Open in IMG/M
Scaffold IDGa0318559_10161782 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1020
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026928Metagenome / Metatranscriptome196Y
F075137Metagenome / Metatranscriptome119N

Sequences

Protein IDFamilyRBSSequence
Ga0318559_101617822F026928GGAGVLVLAGAPVLPCPFFMFWQLRVALCDAEGEGVAVLADAALTAVVPVVDDEVVDVVDDVVDDGEEWLVAALATARLPPNPTPSAPAPTAVPIMILPSREFNVSASLRSGDGPGHRTPALAAAALQ
Ga0318559_101617823F075137N/ATWTTIVLPVPAGTTSAVLQQIAISGNRVAALGQATTPAGTVPIAELSVNGGSSWQQVPFSSPGPDTTFTALTAGSGGFTAAGQFGEPGQQQVAAWTSANGTSWTPAPIGGLTGSQTGGSYQLSALALSGNAVTGIGSLATQASQEGFTVTLPAR

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