NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318549_10115919

Scaffold Ga0318549_10115919


Overview

Basic Information
Taxon OID3300032041 Open in IMG/M
Scaffold IDGa0318549_10115919 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1177
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004800Metagenome / Metatranscriptome423Y
F019985Metagenome / Metatranscriptome226Y
F058836Metagenome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0318549_101159191F019985N/AFHPDYAPGQGIEKIVRNEIFKEIWNEIDRLDQGLSATRFATARSSSAA
Ga0318549_101159192F004800N/AMATLLPKVQEIERRQLADYARVDYAITKGEDEIAALEELCLGPNELQRKASVVRDRTVLAVREVRNNMAKRAITAKNMQGSLIESLRQRSRFAAVDTVDASLRARCFASLECIPTLTLLCHFIDAIKAGDFARAESVRFEFQTREDRHEYAVTSRAIFAQFAPSESADILKRIAKICRAAEMADARVIGLFRRCDPIFVFHRIEPVDHGPDRSRAFDTSLLGARPIPPRERAIVSVRSAFAA
Ga0318549_101159193F058836N/ASASAGLSADLRRQLTETKIEPAAEGPELLPPLRQAEAPPARSSTNKRAQVDR
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