NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318558_10396580

Scaffold Ga0318558_10396580


Overview

Basic Information
Taxon OID3300032044 Open in IMG/M
Scaffold IDGa0318558_10396580 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)686
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008262Metagenome / Metatranscriptome336Y
F038033Metagenome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0318558_103965801F038033GGAGGMTAFDGEAISRADREFLAKLGDHPLMRNPLYSVPPPSSLLSNYVATPASTSAAAIEAAENARFTAALNWMLVNYAFCKSAFMGKGGVISLVDGEMGSIASLRVFMRPYAIRDGRKTISVVDVWTEHPLRAHI
Ga0318558_103965802F008262N/ADHGAMTVAELERHMRARRNGTTTMRCSGTFHDPTRVRTDSHLINWGRHGLGIWDSMTETTWHRRTRAPSARFEFLGQLMRRNPFQCVNTTAEGRQQ
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