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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300032045 Open in IMG/M |
| Scaffold ID | Ga0308400_1000181 Open in IMG/M |
| Source Dataset Name | Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS12-65 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 27887 |
| Total Scaffold Genes | 30 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (30.00%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wyoming | |||||||
| Coordinates | Lat. (o) | 44.5341 | Long. (o) | -110.798 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007033 | Metagenome / Metatranscriptome | 359 | Y |
| F023603 | Metagenome / Metatranscriptome | 209 | N |
| F038584 | Metagenome / Metatranscriptome | 165 | Y |
| F044249 | Metagenome / Metatranscriptome | 154 | N |
| F054644 | Metagenome / Metatranscriptome | 139 | Y |
| F068874 | Metagenome / Metatranscriptome | 124 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0308400_100018118 | F023603 | N/A | MLYTTADFTGQYRLDSNAITQADYQRAIDEHERTLLEYFFEPDSVEKIYAALPSSTPAVGVRNVLRDLALPFIFGRIKMGVASSVAGEPNTQGYTRIGYTPYLAYRGSETLRRLMRFAPFVVQAELTAPTATIPYPSPNPQAPDFVAIGDPVRAYATSGEVQTSVVSVTATDITLAIALPAGPVRLIVENLRIRISRAYLTF |
| Ga0308400_100018120 | F038584 | N/A | MTEEIKQIQKAGEELLATLHATAATEEETKTLDAISKAAAHIRQQLRERMPSAGTRIKVSDLRGARKLMQRYVQKTTVGTNTPREYIGEAFYVTRQLVIEFVQDYLRTETLDVLAEITQVRLNPFTGAPAIVGEGGEKPTMATTPQRVTSNYQKIAFGDVITDEVLLAYPDIVEFLIWHGAYRLEVFLHNALITLLSSNASAATLPTGIISPQVADLLIYMRAFHDQQSAISRRGEWIANAAIVPFPYYWTLVFGALKSTTGEYLQLDRQLQGLALIPAGAAQTAPTVVFNENELEVFFLGDITVNFGRVLDAASDTNVRRLSMDLFYAPLPHAGRPVIVANTQNAINSMAQ |
| Ga0308400_100018122 | F044249 | GGCGG | MTKRDALLALLGASLTIVAKKYAMVLAALIVLGSLANFLGWVHAIVSGEGCKAVKVLQGAARLVFYLIFYVALLVALEQIASYLIPPLLSVAIIYEASLALKKAVQLNIIPAGLVRQLTKVFRHEPPEKAS |
| Ga0308400_100018124 | F007033 | AGGA | MQCRCSQPLWALGIPDCYPVLRPIRRIAFETRLGPSSNPASFDLVNSTVYPNARRLMTPILYNVESERPEAVFEELSGTKFFVRHQPRTFKALVAKPPAEWGINIEQLRCVSRLGVFLIDDAGVVWGRRVSFNEAAPIPIEPGTVQVRLLFPSDTTITKYEFSFDFAQSLMDFELVPIFADAALLNYTPGIAARLTAGWEPPVLFANVFALYTRGAGDLVIPITGLASHLELRNNADTLITTNFTEVSPGLYVSDPLTLSPSGNPYTIRVGSSAPTGAFDYTTAVAQFRV |
| Ga0308400_100018125 | F068874 | GAG | VFGRLRRVLRFYERVELPDVPAQAQSLSYGGKTIVSYPPSPAWAVREPLWLGRRELGVYAPSTAKMKRRMGLPDREIVLFQTGQLYASIQVLNMKKYYLVRVQRDKLFYIIRRFPVERWLRVDASAVRGGLRKALLAALLGCAPLKKTKSVQSVEVAVRREEVVAHETLRLTTLLNDTIHLRNERLVIQYDTIRQMLRIEQVRPVVVVRDSVVRQNMVMQAPAWVAEERSEKRLSWWKRWGQGVFALMLGLSVLGFIGYLWLRALRIG |
| Ga0308400_10001814 | F054644 | N/A | MYYTIESEGLRERRLFRLYQTACMAALELAQRTPHEVRVVRLTTPSGLGRQIMCVYNCKYEVSSSPPPIQVEEDEEDGKRRYRRKRKK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |