Basic Information | |
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Taxon OID | 3300032045 Open in IMG/M |
Scaffold ID | Ga0308400_1000566 Open in IMG/M |
Source Dataset Name | Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS12-65 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 13928 |
Total Scaffold Genes | 23 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 20 (86.96%) |
Novel Protein Genes | 8 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 8 (100.00%) |
Associated Families | 8 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wyoming | |||||||
Coordinates | Lat. (o) | 44.5341 | Long. (o) | -110.798 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002970 | Metagenome / Metatranscriptome | 517 | N |
F002982 | Metagenome / Metatranscriptome | 515 | Y |
F005302 | Metagenome / Metatranscriptome | 405 | Y |
F005631 | Metagenome / Metatranscriptome | 394 | N |
F006418 | Metagenome / Metatranscriptome | 373 | Y |
F007976 | Metagenome / Metatranscriptome | 341 | Y |
F043176 | Metagenome / Metatranscriptome | 156 | Y |
F048124 | Metagenome / Metatranscriptome | 148 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0308400_100056614 | F005631 | GGAG | MQVSVSVDLDNALRKLLPRSARIEAALDAGATAAHGMMQIYPPPPAGSRYRRTGNLRQKLRIKKLSKTSRIVENTASYARYVYGMPQARVHSGRWASVRDAAEAALKEALAVLKERGR |
Ga0308400_100056619 | F002970 | GGAG | MSYNTVIDILKMLSDLEVQYNNAVVPVWYLSTQANWLDAAQLPVRIIPVLGGLRLVEGGVYTPTRATRAVWEIDDLLLVRDVGMGRGVADTAAALADYIEDYVARLRFAWYVRGDVQLLNVSGIVDVIKYGERAYEGVAMTTRFAHLIRAPSV |
Ga0308400_100056620 | F005302 | AGGAGG | MSHSGVIAGLYAGNYAVEISTDGTTWTAVSNATVKIDDVELSRPSGEAYVGGSSDYATVTVGKREPVELTLTFLYNEDTNSAANTIFDQFQSASPRLGVRWSPRGLVGSARAYGTSNDGGTSFGLGVITNVTLSALDPSDAEPYVAMVTVRTPSLRQYTLGSSPTNLNPAS |
Ga0308400_10005663 | F048124 | AGGA | MATISIWRGYRHWNWDEENDYETVTYEDAEEIGAVRFEDEEADIQYRIIEWDEGIVIFYVKREGHYCEAEIYEYPSLEEAAKEYRFVLKKAGVIQ |
Ga0308400_10005665 | F002982 | AGGAG | VKLQFERHPHVICAVLTDAGECDRIITVARPSDAIDVFALDVSPAAYKPLDALFALPRVVCVEIERREGGWRVEVAYWNKGLGTLAQYETDAATLSEALARCVWALAR |
Ga0308400_10005666 | F007976 | AGGA | MPSTELSNFLRVALDVQGGPYSGIHVEDGVILATDGVMLVAKKYNNLAYLRGSGSLSPKAAKVLAALAEATWIGSIEVDGNRVTVTAQTTRYDEQLGAEAAGAYREVTLEFYCPQTPVKRMLAVLTDESRGWQQIVENPRLKTVKEASAKDYVALVDDPRNGGELFRQKADNDTHWYSVAQLRKGLRLFGKNSRLSVRRSSSGWLTFSDQWGYTFAVTPFVKHNETQR |
Ga0308400_10005668 | F043176 | AGGAGG | MLQTYKIWEGERTFLPGDDASKYTVIEIVAEELGWFEDVNPDGFSCTAYYVYRTESGEIIINVVNKNYGVGEPNYGTIYRFSSLEEAAQSEQRYALSELRLI |
Ga0308400_10005669 | F006418 | AGGAG | MPKRRSAPKPRPAREVVIEEGADYRLLYDRETRDYAVEYRGEPVGWRAYVEDARRLVEQLRYEDARGE |
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