NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308400_1000566

Scaffold Ga0308400_1000566


Overview

Basic Information
Taxon OID3300032045 Open in IMG/M
Scaffold IDGa0308400_1000566 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS12-65
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13928
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (86.96%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)8 (100.00%)
Associated Families8

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002970Metagenome / Metatranscriptome517N
F002982Metagenome / Metatranscriptome515Y
F005302Metagenome / Metatranscriptome405Y
F005631Metagenome / Metatranscriptome394N
F006418Metagenome / Metatranscriptome373Y
F007976Metagenome / Metatranscriptome341Y
F043176Metagenome / Metatranscriptome156Y
F048124Metagenome / Metatranscriptome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0308400_100056614F005631GGAGMQVSVSVDLDNALRKLLPRSARIEAALDAGATAAHGMMQIYPPPPAGSRYRRTGNLRQKLRIKKLSKTSRIVENTASYARYVYGMPQARVHSGRWASVRDAAEAALKEALAVLKERGR
Ga0308400_100056619F002970GGAGMSYNTVIDILKMLSDLEVQYNNAVVPVWYLSTQANWLDAAQLPVRIIPVLGGLRLVEGGVYTPTRATRAVWEIDDLLLVRDVGMGRGVADTAAALADYIEDYVARLRFAWYVRGDVQLLNVSGIVDVIKYGERAYEGVAMTTRFAHLIRAPSV
Ga0308400_100056620F005302AGGAGGMSHSGVIAGLYAGNYAVEISTDGTTWTAVSNATVKIDDVELSRPSGEAYVGGSSDYATVTVGKREPVELTLTFLYNEDTNSAANTIFDQFQSASPRLGVRWSPRGLVGSARAYGTSNDGGTSFGLGVITNVTLSALDPSDAEPYVAMVTVRTPSLRQYTLGSSPTNLNPAS
Ga0308400_10005663F048124AGGAMATISIWRGYRHWNWDEENDYETVTYEDAEEIGAVRFEDEEADIQYRIIEWDEGIVIFYVKREGHYCEAEIYEYPSLEEAAKEYRFVLKKAGVIQ
Ga0308400_10005665F002982AGGAGVKLQFERHPHVICAVLTDAGECDRIITVARPSDAIDVFALDVSPAAYKPLDALFALPRVVCVEIERREGGWRVEVAYWNKGLGTLAQYETDAATLSEALARCVWALAR
Ga0308400_10005666F007976AGGAMPSTELSNFLRVALDVQGGPYSGIHVEDGVILATDGVMLVAKKYNNLAYLRGSGSLSPKAAKVLAALAEATWIGSIEVDGNRVTVTAQTTRYDEQLGAEAAGAYREVTLEFYCPQTPVKRMLAVLTDESRGWQQIVENPRLKTVKEASAKDYVALVDDPRNGGELFRQKADNDTHWYSVAQLRKGLRLFGKNSRLSVRRSSSGWLTFSDQWGYTFAVTPFVKHNETQR
Ga0308400_10005668F043176AGGAGGMLQTYKIWEGERTFLPGDDASKYTVIEIVAEELGWFEDVNPDGFSCTAYYVYRTESGEIIINVVNKNYGVGEPNYGTIYRFSSLEEAAQSEQRYALSELRLI
Ga0308400_10005669F006418AGGAGMPKRRSAPKPRPAREVVIEEGADYRLLYDRETRDYAVEYRGEPVGWRAYVEDARRLVEQLRYEDARGE

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