NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308400_1000754

Scaffold Ga0308400_1000754


Overview

Basic Information
Taxon OID3300032045 Open in IMG/M
Scaffold IDGa0308400_1000754 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS12-65
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11397
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Candidatus Thermofonsia → Candidatus Thermofonsia Clade 3 → Candidatus Thermofonsia Clade 3 bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006252Metagenome / Metatranscriptome377Y
F007404Metagenome / Metatranscriptome351Y
F012577Metagenome / Metatranscriptome279Y
F016100Metagenome / Metatranscriptome249Y
F072382Metagenome / Metatranscriptome121N

Sequences

Protein IDFamilyRBSSequence
Ga0308400_100075411F006252AGGVRSFDEQAAFGLPYERVIAQTAALLLYPHRLDLTLVRLDAYAPLDYLLLDGEQPVAALEVKRRSVRSDTYRTTILPQSVVDAAKRLTIPVYAAILFTDGLAIFDVLRTPSSVRWLRTRRGVLRKHREYDISERLVKVEEVHQRQRRSA
Ga0308400_10007543F012577AGGAGMLVAITKPHQQFPVPLTVADYEFSTSDDGDERGRVTLPPGYARSGVMTQIGDELIVYCTQLSRTVWRGQIERIEEARDGSISWHALGFGALQRDARLSVVQNMTDMTRWKPVGAGFMTGSGYDSRGDLWEYEVVEAIGFPHVRIRTKKAFTITNATLFFVAYLFEQPERYVTVRTNESIIVLPAIMTGLADGVWVAPVTAIPQPNVYTLTLGAFTGLSSTGTVTATTCYGWVIGVRASGAETVAGATSVTFRAVINLSEIFGISGGLLSINLSGCCAVFLPPQTNVKIEKPDANLRELVEHSSDDFVQVRYHRKRFFRDRPEPIVDFRTDSPLVWRFPETTRVVDISKAPNRVYGQYRGYWTDHLTATTTIQSLESRRQLARRVASVGEYGSKAIAEARRDEAATALDRQIAPITVELDNSRYELMTRTGETVPNWAADVSDYAIVPGYFRNAKITSRVITRDRTTYTVSFNPDDFVTVL
Ga0308400_10007545F007404GGAGGMEIIEIFQLLAAGHVGLTATDYLWNAVFGATGAATAYLADKEGVVLLPRYDAEQHSVELGALGRVLVGAGAGTLVGYSGYVPFVAGVVAPTLLPALIDKIAWFVERRRK
Ga0308400_10007547F072382AGGAGGMKTVYHTKDVYFPPFSIKIEPERGTWFADVYVRYAENPSLDTKYNAYIGADNFLAETPIPAVDRRDVAKAIESLVFDYGLVGLVIYPTREGWGVNITICSEIENQYLHGEGKTPADAIRNSNYPPPLRNV
Ga0308400_10007548F016100AGGAGGMVTSVKVERFKEYSELVRVVSRSEKTPATNKDIIRPLNYELFIGSHLPEPDWHRLGALVVALFRSFAVVDVEVWQTDAGIWVADALVDFGDRRRLRKGEGDAPLQAVIELITDIQRY
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