NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0308400_1000759

Scaffold Ga0308400_1000759


Overview

Basic Information
Taxon OID3300032045 Open in IMG/M
Scaffold IDGa0308400_1000759 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS12-65
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11374
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (88.24%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Candidatus Thermofonsia → Candidatus Thermofonsia Clade 3 → Candidatus Thermofonsia Clade 3 bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002970Metagenome / Metatranscriptome517N
F004791Metagenome / Metatranscriptome423Y
F007404Metagenome / Metatranscriptome351Y
F014738Metagenome / Metatranscriptome260Y
F016100Metagenome / Metatranscriptome249Y

Sequences

Protein IDFamilyRBSSequence
Ga0308400_100075912F007404GGAGGVDIVEIFQLLAAGHNGLTAVDYVWNAVFGAIGASTAYLADKEGVVLLPRYDAEQHSIELGALGRVLTGAGAGVLVGYSGYIPFVAGVVAPTLLPALIDKIAWFVERRRR
Ga0308400_100075913F014738GGAGGMKLDVLLLISAFALAFVHPDAAQVAATVVLVLLMVRIERGRRARKKKSAPVAH
Ga0308400_100075915F016100AGGAGGMLKSVKIERFKEHSELMRVVSRSEACLATNKDRIVPLNYELLVGTHVPEPDWRRLGALVVALFRSFAVVDVEVWQTDAGIWVADALVDFGDRRRLRKGEGDTPLQAVIELITDIQRY
Ga0308400_10007593F002970GGAGMSYSTVVDVIELLAGLAVQYNSAVVPVRRLSTQPNWSDAAQLPVRIIPALGGLRLVEGGVYTPTRATRAVWEIDDLLLVRDVGMGRGVADTAAALVDYIEDYVARLRFAWLTRGDVQLLNVSGIIDVIRYGERAYEGVAMTTRFAHLVRAPSV
Ga0308400_10007595F004791AGGAGGMDKPAEIYDIETIRVDRNALTIREAATVLNNELTAPAVARLVRKAIGTQADRFPLRALKAVYERVLPQIFEPDEAVRSRVAGLVPAVGEITLGEYHEFLDASERKIAFPPVAATLLIKAYGEDILNEPYAAAALLLKKIFDSIGDEGNE
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.