NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308400_1000847

Scaffold Ga0308400_1000847


Overview

Basic Information
Taxon OID3300032045 Open in IMG/M
Scaffold IDGa0308400_1000847 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS12-65
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10607
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (81.82%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)9 (100.00%)
Associated Families9

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000642Metagenome / Metatranscriptome965Y
F000855Metagenome / Metatranscriptome859Y
F001381Metagenome / Metatranscriptome709Y
F002229Metagenome / Metatranscriptome580Y
F002978Metagenome / Metatranscriptome516Y
F007172Metagenome / Metatranscriptome356Y
F008135Metagenome / Metatranscriptome338Y
F015735Metagenome / Metatranscriptome252Y
F066811Metagenome / Metatranscriptome126N

Sequences

Protein IDFamilyRBSSequence
Ga0308400_100084710F000642GAGGVQTISIALALCAVGAAVWYMRRRDAGAGRVRGWLLLYDDVGGWRTLPAVYGDSGIVADGVTYPASLPALRVGRELIWIARCDAAALIEHRALERAREAAALASLWRGGGQWLDLLRVMGVVLPAVFAYFTWAQVSALQALVAQILALVGER
Ga0308400_100084711F001381GAGMHYVVATLYVFVWLALAAAAALVLPRWALPAALVQLAVAYVMVRAVWLTVARDD
Ga0308400_100084712F000855GAGGMDWLEDFWSKVVGWWDHTSADMYNGIVAFVNSLVEIWNGWMDALMHPAQAMPSIPALRFIVDWLGGIVDYTRLMYMLVDYIAYASVVRQALLAQLAIVAVGLGFRAWLVIRRIVLVS
Ga0308400_100084714F066811AGGAGGVEFNNQPQFNAPGMTDILNAATSIFNPFVGVLALAIGVTLGARMLGRIVNLF
Ga0308400_100084718F007172AGGAGGMNTPERRAFAAALRAAKNNAYCRAAGGFVIVRMSDGSIDWFPAGQPPHQGGEPDRRATILGKWRWNHKRWSRIA
Ga0308400_10008472F015735GAGGMVVYHHWSVEWHPRSDPPGGLLRVVCIARRAVSDPWSGPGPFPPDIDRAVRFWNLVASGGARDYGAGYEVVWRLSVVADDADGDAPSGDWSDDPVYRARRRLLRWIMRSQCPIPALADHFADEHFRASPEYFGLLEG
Ga0308400_10008475F008135AGGAGGMCAVIDPRTERVLTEAGASIARVLDARRRHAVRLALEVCSYIVAALPPDEDLTFGDVVRVLRWFAKSFGKDDVEADDAGD
Ga0308400_10008476F002229GGAGGMVTLLTFDGVEDVDYVPSDAEIRASLDDSGLYGMVLGGATWMRLSSGAGWWTVVCNRRVTATPAAIGWRWVADGLGARGYWSPALACIPGEVRALCGGCGGCVDDDDGDDEE
Ga0308400_10008479F002978GAGGVSVRDWRVMLVPWADRRLWFIQARRGRRVVWGVVYDAADPESVALARRAVATLRTAGADCSSLPAVLPGSPSAPGPGA
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