NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308400_1001600

Scaffold Ga0308400_1001600


Overview

Basic Information
Taxon OID3300032045 Open in IMG/M
Scaffold IDGa0308400_1001600 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS12-65
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7194
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (83.33%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002982Metagenome / Metatranscriptome515Y
F006418Metagenome / Metatranscriptome373Y
F007976Metagenome / Metatranscriptome341Y
F010840Metagenome / Metatranscriptome298Y
F043176Metagenome / Metatranscriptome156Y
F048124Metagenome / Metatranscriptome148Y
F075805Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0308400_10016002F048124AGGAGGMARISIWRGYRHWNWDEENDYETVTYEDAEEIGAVRFNDEEADIQYRIIEWDEGIVIFYVKREGHYCEAEIFEYPDLEAAAKDYAFVLRKAGVI
Ga0308400_10016004F075805AGGAGGMRVNVWHGWRAVHNGKDISRWEWIEFDGESLGSLVVEIDEDRTDERVFYQTTDGRIVVAEHRYGDWEKGGVDYGVVSVYADLEDAALRGWRDDLVRIGAYDAPTLELDEWLSRYEEEE
Ga0308400_10016005F002982GAGGMKIAFERTPTAICAVLYEPGECDRIISVSRASDAIDVFALDVSPAAYKPLDALFALQRVVCVEIERREGGWRVEVVYWHKTHGTLAQYEAEAATLSEALARCVWALAR
Ga0308400_10016006F007976AGGAMPSNELAHFLNVALDVQGGPYPGIHVEDGVILATDGVMLVAKKFDDKLFLRGEGAISPKAVRVLEALAEGTWIGSIAVVGNRVTATAQSTRYEENVGEVAGEYCEVKLPEFYCPRAPVARMLGVLHDESRGWQQIVENPNLKALKEMSARDYVALIDNPRNGGELFRPKADNDTHWYSVAQLRRGLRLFGKNSRLSVRRNSSGWLAFGDQWGYTFAVTPFIKHN
Ga0308400_10016007F043176AGGAGGMQTYRVWEGERTFLPGEDTSKFTIIEITGEELGWFEDVIDGKTYYVYQTIEGEVVINIVEQNYGIGEPNYGTIYRFSSLEEAARSEQRYALEELRLI
Ga0308400_10016008F006418AGGAGMPKRRSAPAPRPAREIVIDSGDDFKIIFDRETRDYAVEYRGEPVGWRAFIEDARRLVEALRHEDARRGE
Ga0308400_10016009F010840AGGAGGVNLPFSQPLDKVTYGALAAATVIILTWALREFAGIELPAEVQSALAVIFGYVVSYHIPLNEIEAEAIARKYYKHK
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