NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308400_1005662

Scaffold Ga0308400_1005662


Overview

Basic Information
Taxon OID3300032045 Open in IMG/M
Scaffold IDGa0308400_1005662 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS12-65
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3468
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006252Metagenome / Metatranscriptome377Y
F019420Metagenome / Metatranscriptome229Y
F060673Metagenome / Metatranscriptome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0308400_10056621F060673N/ARQKPTLFVGELMRRIGVSIKGKQHRQDGKVVRTYYLINVERARLRTTGIRNRYADRAAPVFEFLGTPVTTPYRNKRKSGVVTAAAAVH
Ga0308400_10056622F019420GGAGMATYRDVTFWSGATDGDREAAVIRARLLGMVIELGDDDERPDKMTAFYEVDGGGIIVYEVECWEADGRMTARWQRVASLEDVRRNRAYAACLERLGL
Ga0308400_10056623F006252GGAVKSFDEQAAYGLPYERLIAQTAALLLYPHRLDLTLVRLDAYAPLDYLLLDGDCPVAALEVKRRSVRSDTYPTTIIPQSVVDAARRLTIPVFAAILFTDGLAVFDVLRTPSSVRWLRTRRGVLRKHREYDVRERMVRLEEVHQPPRRSA
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