NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308400_1013680

Scaffold Ga0308400_1013680


Overview

Basic Information
Taxon OID3300032045 Open in IMG/M
Scaffold IDGa0308400_1013680 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS12-65
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2117
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039409Metagenome / Metatranscriptome164Y
F072811Metagenome121N

Sequences

Protein IDFamilyRBSSequence
Ga0308400_10136801F039409GGGGGMQPKVCLVLNSFGSFNRAWTQILRNLGIDYTLCIATSGTTSATIQTPQGVFSPSSPDLRGYFRQFNAVILCDNTGDLAATSVNSYSVFWMRWNDPEDPAFLFFNPHFSAAIGGAYNSSFPSDFPIVRPSPSDIAGTLYPADGGSASSSNPLAATSVSGRGACVLFLAENIRAHVQTICSTHTNN
Ga0308400_10136803F072811N/AEEGYADCLLESDATRRIAQRGDTTYRLEYRMRDADSWQTLSEGFAAVESITPMRRRSDKFPYRVRFALRGMWSRFGEIYQLASTALDGVALGDAFSKLLEGCGFERISSPPAALQNLRMPAAPAGDTGSGWRYAPRVGQSGEEILRTLLLFATATGNEWRLRWDYAAGKWVLEPKPDGIPAWTLLDAGSVDLALRQYRYSELEIVPKPPEANIIYVEGATAPSKEGERLVVVLVNEDSLTEPDSLDYLGRYKLLRVQADTLSDLDAVQRLAERLYDAAARHATEAQARLPLPPVYDAALLELLSPPRRVQVLEGSSVLLDGWVKRATLTASGGSQPRAELLLHISTRYAGDPRD
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Institute for Fundamental Biomedical Research
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