NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308400_1017578

Scaffold Ga0308400_1017578


Overview

Basic Information
Taxon OID3300032045 Open in IMG/M
Scaffold IDGa0308400_1017578 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS12-65
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1818
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029920Metagenome187Y
F061873Metagenome / Metatranscriptome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0308400_10175781F029920N/AMISMSDLERAFREERPLKGFIAPGLALSYQPRAYLAIGRADRQPDDDDIALVIALAREAFIFLVREPQRRVVELNGIAWHLARWSLKRESVADHLPQSERRNR
Ga0308400_10175785F061873AGGAGMSEKTETLTLDDLIRRGVEIREKRIAEERARIAAFYEQLARESAEREREIRALLPQPLNELSKVDVGVRHAHIYITEPFPGKGKVRIYASKKDDQWHLLEFAAYNPDGYYLKFPSLEEAVAFAAG
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Institute for Fundamental Biomedical Research
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