NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308400_1018984

Scaffold Ga0308400_1018984


Overview

Basic Information
Taxon OID3300032045 Open in IMG/M
Scaffold IDGa0308400_1018984 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS12-65
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1732
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020833Metagenome / Metatranscriptome221Y
F042064Metagenome159Y
F046762Metagenome / Metatranscriptome150N

Sequences

Protein IDFamilyRBSSequence
Ga0308400_10189841F042064N/AMNSIVRDYLAYALANTSRLARQLNYESLTPVVAMWQENSYLVVATCDGYRQHEFRLLMFRDDGSSPALLHGRVLAFSPVAIAAAARALDEQLGENDLLHIDYDDDQTTISLLAPGITIGLKATESRHKDHIRRFATTFTEAERPDVIKINAKEFLSSLPRPRRNQERMYMLIHFHGNTWQVGTQPNIGDWQPTEHSGVFDAHDVHGTPDCKLNVQMLRESLEIAERYHPFAECTIALTKRNEPVLVRAEIGKVLDFRAYIMPIVKIQL
Ga0308400_10189842F020833N/AMMDELVDYLRKHRVLEKSPRKALLLVADHALAREITITPDALKQALCTALPECGEALFDLLGVRIPYSLSALCYLALYDDWLRYAMCLTLESLLTNRKDVV
Ga0308400_10189843F046762N/AMTRSRFDFRIKFDANREVFVLTVAPEVTSLDGRGVAPKAYEAHAICMSPNLFVVRIPDNEIPSDFVAVGDNNLPRGIELIELRFVGSKVCFTFQLSDEALLRVTPTVYRAWMQSLLQAGVSLDAFARE
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