NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0308400_1026655

Scaffold Ga0308400_1026655


Overview

Basic Information
Taxon OID3300032045 Open in IMG/M
Scaffold IDGa0308400_1026655 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS12-65
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1402
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005028Metagenome / Metatranscriptome414Y
F008499Metagenome / Metatranscriptome332Y
F018115Metagenome / Metatranscriptome236Y

Sequences

Protein IDFamilyRBSSequence
Ga0308400_10266552F005028AGGAGMCDDDLRNDDLRAAMSFFAARLRGVDVTEAGLRRWTRHKLRNDAQAVAELMLTVGYRPTFIRYFLRYHIPALNESAAVGETYTDLDATDAHLGLCWRLDEEVLTVLSDLHAAAKRLRQPYRDLAAVCLKWGYVHETVVQLLAKALERKAKDVVED
Ga0308400_10266553F018115AGGAGMNDAEDRFVRWYAHLAEDTPLDRHAARALLRRALADREALAEYLLEHECAPSLLGEFINRHRNDALSDAARGASLRLASRTLRALDYLEERDRWATLEWLKRGVVPSARILRRLCEEIDD
Ga0308400_10266554F008499N/ASRLTTFRSKSEPRWKRKERSVLKALQATFGRVSDPSLARLLTSTGRVGHLTRFGVDGFVGDNPGFAVEVKARKRMLTKPTLDALLQTIDRAARYERIPLFVLVFGDDVPTHTENGARVDREWVMMPRRVLDELVGKERKDE
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.