NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315289_10821964

Scaffold Ga0315289_10821964


Overview

Basic Information
Taxon OID3300032046 Open in IMG/M
Scaffold IDGa0315289_10821964 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)814
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5072Long. (o)-110.3564Alt. (m)Depth (m)87
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004005Metagenome457Y
F019103Metagenome231Y
F054585Metagenome139N

Sequences

Protein IDFamilyRBSSequence
Ga0315289_108219641F004005N/ANTMTTATPNRNLTMYGVADIAEYIQQVKQSITYKFFGGNMVVAGLMSDAQELMLYNDVERARQTLNIAKSILFAIMEGELVGTVERK
Ga0315289_108219642F019103N/AMNKTPIWTTGYKPTKEDLKGLCNHRFETAGGLVLDCYLSYEAEERETHDEPGCAAAIELVWALVEGVDISEVLGDLAETIEEEALSDLEDQIKDAAFDRGEE
Ga0315289_108219643F054585N/AMNWLASALVALVLGTSHYLDWPSEIEAAQDAVAAYKSAKTDQERQQRFEAAVQQLCGENAGWRLLDDGAV
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