NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315289_11026438

Scaffold Ga0315289_11026438


Overview

Basic Information
Taxon OID3300032046 Open in IMG/M
Scaffold IDGa0315289_11026438 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)689
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5072Long. (o)-110.3564Alt. (m)Depth (m)87
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005775Metagenome390N
F016114Metagenome / Metatranscriptome249Y
F078633Metagenome / Metatranscriptome116N

Sequences

Protein IDFamilyRBSSequence
Ga0315289_110264381F078633N/AMRHTWQPDLKREWWAALQDKNTMHGPTFEASAHPDDIERFAAFASWIGDLLRNPQKFT
Ga0315289_110264382F016114N/AMHIKYWAAAFFDSRDVETINEMAAMARRMLICQGELQRDELLRLKMKYPHLTTKD
Ga0315289_110264383F005775N/AMAKQRPIYTKAQHQIVTPAFVEKKIQLHKSIKWTTKDDRDLFIMVSGSVTRYVPKSEHNSQAPMGFFNLQMGHYNKISIHTRDFAQLAEVFEQITLFLKNNSGKLDQVVTKELD
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