NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315330_10323706

Scaffold Ga0315330_10323706


Overview

Basic Information
Taxon OID3300032047 Open in IMG/M
Scaffold IDGa0315330_10323706 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 34915
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)967
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004224Metagenome448Y
F079986Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0315330_103237062F004224GGAGMLEIVDMFRKKDKEGLKMYLQKYLPHMDDVEIEDFIVGSGDTAGIEGQLIRLGSGRDYKGKLDMIEEANNVRKLEDFDIEGVSKNAEGGRIGFSGGGIFRAIIANSAKKAGMTPYQYIKATSYKSLPQEVKMFMSKADFEQLKLGQEQMYSNYIDMAKTRFNFQKQIEGGKKTPARELFEGMEKTMDEQSYVPKTVTDKDIAEMELMVKNRFQKGRKDNAEGGLQTMLGE
Ga0315330_103237063F079986AGGAGMDIEAILEMYEDDYNPSSKVPGPRNMYNQGQLVQPNADGS
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