NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315329_10269819

Scaffold Ga0315329_10269819


Overview

Basic Information
Taxon OID3300032048 Open in IMG/M
Scaffold IDGa0315329_10269819 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 32315
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)901
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005103Metagenome / Metatranscriptome412Y
F008914Metagenome326Y
F099863Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0315329_102698191F005103N/AMKEENNNIQIFINKKEMLYSHQNMARAINSFLPYLTNNDLTELGQDILDLMNHREKKEAESRLEVEKHSWPYPDTKNQI
Ga0315329_102698192F099863GGAGLKKDEEELAAIKKRERIFDFFWTLEEQHTILGLLKGRKLKKELKEHLKKKEVK
Ga0315329_102698193F008914AGGMTDPFSEQIETQREVAIEKCRTWVRGWDAEQREMVLWILEEEVRHDKLMDFVHEDGSKTKPEKLN
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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