NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315329_10358070

Scaffold Ga0315329_10358070


Overview

Basic Information
Taxon OID3300032048 Open in IMG/M
Scaffold IDGa0315329_10358070 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 32315
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)776
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027156Metagenome195Y
F029745Metagenome187Y
F058991Metagenome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0315329_103580701F027156GGAGMIPKVGQLLRWYDNFDNLEENNDIGIVKEVQSEGENFFGNDEPQYVVIIDWCKGPHHSFHDQEEYEESIRQNEIVVVV
Ga0315329_103580702F058991GGAGGVQTHADFRIGMLVRWHGDTHSGGDIDDLGIVVKMPGADWHGNYHIAWSVTNTTSHHSPDMIEESLYQGHLEIV
Ga0315329_103580703F029745AGGAMASKAPRVGDVVKSRVTTESVAGFIMSTKGIYVWVRFFDTALEGESWDVYTRRDTLEVLSRANSR
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