NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308416_1000126

Scaffold Ga0308416_1000126


Overview

Basic Information
Taxon OID3300032049 Open in IMG/M
Scaffold IDGa0308416_1000126 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS60
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26519
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)31 (93.94%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022362Metagenome / Metatranscriptome214N
F056952Metagenome137N
F089597Metagenome109N
F096158Metagenome105N
F098168Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0308416_100012610F098168AGGAGGMRARFQSDLVRDRLRAIRSIVREVVLERRIVFVEARDGKLSFSTRSGIAIGEIRFDADDKKVVIEEEGAAAFDANEFVSSIDRAAGEVVEIANGPDRDYIRFTATEYAFPRACVASLPHVAHSDHDRVSVSSSESPVVRFAFELEGIFARTVFASKSSVQSKSRFVLYRSGASGLVVFSTDEKRYAIVRSRVDADTESKVLAYLDYDSAVLAHSFLDSSDERVEVGVDTNGWLVLAGESFSVGLATLSVPNNGHRFLDFDRKFRARVHRAATIPYESFVRAYRSIEPVISKEWRTIGFEFGESSVTLSATSDLGVSAKSRVDFESIVPTNLRTTIYLDSKYVGDFLAAVRRVVSAEALESTKIVFEREEDSKGIVFFGIESDDWRYGMMAISRD
Ga0308416_100012615F096158GGAGGMSKTSAHRFVIESTQFANLERALSVALPAAKSLGVDAGIFWLRYSIFAATPYASIGLASCDLELEELPECIAISQLAARAFLFELQTHRVRYLERIDFVATRDRVVFSFEYDRKSKSSTPPLFSRYSSSWRPRTTPREYYELLTAHRPYFECTLATREIRKKLRGHEDYGYVVLEDFPDVISHVTVSRSLLVAFLEAAKDEDTTFRLEYYEGQRCVVCRAGDVIAILSVID
Ga0308416_100012621F089597AGGAGGMPRRLSWDEVSACIDRESVERYGRYLRGVVEGETYVPKATTTPSLVNRTIVLGVVYDWCRHRYRHRPFAVVIRAFSWCARFCYPFHPVFARFGIESEDVIEALEWIATDSYSFRFAPASYGVTIVSEHRDGDRRARHYFTPVPLVAPGIDDPTAVPFRLRMATRLVMEAALRAICVVDDDGNYDEIAIRATVRDLLEVAAPLATPN
Ga0308416_100012622F056952GAGGMKRRPSYRLLDVFGNVVYTSSSFRYTIRRLAQSLVKPIIYSAQGRRHVVFYLENGVVKCCVGNFGESRKSVEERVIRLFRAADVARRVRRHV
Ga0308416_100012630F022362GGAMIANLLDAVVNVLNEPPLAASVPATKTWAHYWVLARETPDVCVVTFVRSERERLSRSRFRFLLDVEIVRARPYVDASSIETVVNDVHSIASRITSQEVLERGDIAYAFESISFSDPLYEIEEVFDESSFVRASITARYAVLESL
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Biomedical Sciences Research Center "Alexander Fleming"
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