NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308416_1000260

Scaffold Ga0308416_1000260


Overview

Basic Information
Taxon OID3300032049 Open in IMG/M
Scaffold IDGa0308416_1000260 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS60
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18965
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (91.67%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)8 (100.00%)
Associated Families8

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002970Metagenome / Metatranscriptome517N
F004791Metagenome / Metatranscriptome423Y
F005302Metagenome / Metatranscriptome405Y
F005631Metagenome / Metatranscriptome394N
F007404Metagenome / Metatranscriptome351Y
F014738Metagenome / Metatranscriptome260Y
F019420Metagenome / Metatranscriptome229Y
F070748Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0308416_100026010F004791AGGAGGMTKPAEIYDTEALRVDRSALTIREAASVLNNELTAPVVARLVRKAIGTQADRLPLKALKAVYERVLPQIFEPDEAVRSRVAGLTPVVGEITLGEYHEFLDASERKIAFPEVAKTLLVKAYGEDILNEPYAAAALLLKKIFDSIGDEGNA
Ga0308416_100026017F007404GGAGGVDIVEIFQLLAAGHAGLTAIDYLWNAAFGAIGATTAYLADTNGEVFLPRYDAEQHSIELGALGRVLVGAGAGTLVGYSGYIPFIAGVVAPTLLPVLIDKITAFVERRRR
Ga0308416_100026018F014738GGAGGMKLDVLLIIGAFALAFVHPDATQVAATAVLVLLTVRIERGRKAGKRMRAPVAHRGA
Ga0308416_100026023F019420AGGAGGMKTYRGVTFWSGATDGDCEATVIRARLLGMVIDLGDEERPDKMTAWYEAEDGGIIVYEVECWEADGRMTARWRRVASLEEARYEIV
Ga0308416_100026024F070748GAGGMRSFDEQAAFGLPYERVIAQTAALLLYPHRLDLTPVRLNAYAPLDYLLLDDGQPVAALEV
Ga0308416_10002603F005631GGAGMRVSVSVDLDNALRKLLPRAARIEAALDAGAAAAHGVMQVYPPPPAGSRYRRTGNLRQKLRIKKLSKTSRIVENTASYARYVYGMPQARVHRGRWASVRDAAEAARKEALAVLKERGR
Ga0308416_10002608F002970GGAGMSSSAVTDIIELLAGLAVQYNNTVVPVRRLASQPNWSDAAQLPVRIIPALGGLRLVEGGVYTPTRATRVVWEIDDLLLVRDVGMGRGVADTATALVEYIEDYVAQLRFAWLARGDVQLLNVSGIVDVVRYGERAYEGVAMTTRFAHLVRAPSV
Ga0308416_10002609F005302AGGAGGMSHSGVIAGLYAGNFAVEISTDNTAWTAVSNATVKIDDVELSRPSGEAYVGGSSDYATVTIGKQEPVELTLTFLYNETSGSAANTIVDRFRSATPTLGVRWSPRGLVGSARAYATSNDGGTTFGLGVITNVTLSALDPSDAEPYVAMVTVRTPSLRQYTLGSNPTNLNPAS
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