NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308416_1000554

Scaffold Ga0308416_1000554


Overview

Basic Information
Taxon OID3300032049 Open in IMG/M
Scaffold IDGa0308416_1000554 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS60
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13098
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (90.00%)
Novel Protein Genes13 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)12 (92.31%)
Associated Families13

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004307Metagenome / Metatranscriptome444Y
F005028Metagenome / Metatranscriptome414Y
F006252Metagenome / Metatranscriptome377Y
F006418Metagenome / Metatranscriptome373Y
F007976Metagenome / Metatranscriptome341Y
F008499Metagenome / Metatranscriptome332Y
F018115Metagenome / Metatranscriptome236Y
F032180Metagenome / Metatranscriptome180Y
F043176Metagenome / Metatranscriptome156Y
F044842Metagenome / Metatranscriptome153Y
F048124Metagenome / Metatranscriptome148Y
F051735Metagenome / Metatranscriptome143N
F075805Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0308416_10005541F051735AGGAGGMFRDVTIINGPVLRDGVADYERVRIKARPLGRPYTWDNGRAWNPHTTNGGFILVFECEDGAVYIQEIEWEVDPYPDATPDPRTYYYYERYASLAEARAGGRGWLIEYAPGTE
Ga0308416_100055410F044842AGGAGMEEIELWCGIRGNTFRSTQKVCFVGEFLAVVDVARTDEWVERCALYRIEDGRVVVHQLRLSLLDDGVDVAEAYVLPALDAGEGAKEQR
Ga0308416_100055413F032180AGGAMWWKIEEIPEQELENWANEVGRFERAAKRDVAVRAAGAFVIYDVDGKLGYVAGREAPDGAYLVERWVRGKRGWTLYE
Ga0308416_100055414F005028GGAMSDDDLRAAVQFFAERLRGADLDKTQPEESDETQSPAEGVIAARLLRWTRTKLRTDARAVAALMLHVGYRPTFIRYFLRYHIPEINEIATVGEMYIDPGAAPEARLGLCWRLDEDVLTVYIDLHAAAQRLRQPYRDLAAVCLKWGYVHETVVQMLAKALERKPRNVVED
Ga0308416_100055415F018115AGGAGMNDADERFVRRYAHLAADAPLDRHAARALLRRALADREALAEFLLEQYTPALLGEFIFRHWNDAINDAPESAALRLASVVKCALERIEDEDDRRAAEWWFRLGLVPSTRVLRQLCKGINDER
Ga0308416_100055416F008499AGGAMKSRSEPRWKRKEREAVKALQATFGRVGDPSLARLLTPTGRVGHLTRFGVDGFVGNEPGFVVEVKARRKMLTKPTLDALLQTIDRAARYERIPLFVLVFGDDVPTRTENGARVDREWVMMPRRVLDELLGKESANE
Ga0308416_100055417F004307AGGAMFKELISNGNHRERPELNGAYIGRFLGVKERQRATFETRLSPEPVMEDAFVFEFEVRDFEIEEPIRVSKWVRKPARLDHPGKSGKATNLYKVLAWLYGVSVMTDEQLANAEEFVQNAIGREYQLTLETKPNGWCEIVHIAPVRARMRKEETIDEVPF
Ga0308416_10005542F006418GGAGGMSKRRFAPKPQPAREVVIAEDADYRILYDRETRDFAVEYRGQPVGWRATETEARRLVEALRYEDARRGE
Ga0308416_100055420F006252N/AQTAALLLYPHRLDLTPVRLNAYAPLDYLLLDDGQPVAALEVKCRSVRSDAYPTTIIPQSVVDAARRLTIPTYAAILFTDGLAVFDVLRTPSSVRWLRTRRGTLRKHREYDISERMVRIEEVHQRQRRSV
Ga0308416_10005543F043176AGGAGGMLQTYKIWEGERTFLPGDDTGKYTVIEIVAEELGWFEDVNPDGFSGAAYYVYRTESGEIIINVVNENYGIGEPSRAVIFRFRSLEEAAQSEQRYALEELRLI
Ga0308416_10005545F007976AGGAMPGTELSNFLRVALDIQATPYPGVHVDDGVILATDGVMLVSKKYNDPVYLRGRGSLSPKAARVLEALAEASNIGSIEVNGNRVTATVQTTRYDEKLGVEVAGGYCEVKLPEFYCPRAPVARMLGVLHDESRGWQQIVENPNLKALKEMSARDYVALIDNPRNGGELFRPKADNDTHWYSVAQLRRGLRLFGKNSRLSVRRSSSGWLAFGDQWGYTFAVTPFIKHN
Ga0308416_10005547F075805AGGAGGMRVNVWHGWRAVHNGRDVSKWGWIEFDGEPLGSLVVEVDEDRTDERAFYRLRDGRIVVAEHRYGDWEKGGVDYGVVSVYADLDDAARRGWYEDLVRIGAYDAPSRELDEWLSRYEEEEE
Ga0308416_10005548F048124AGGAGGMATIRIWRGYRHWNWDEENDYEVVTYEDAEEIGAVRFEDEEADIQYRIIRWDEGIVVFFVERKGHYVEAEIFEYPDLEAAAEQYWFVLKKAGVIQ
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