NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308416_1000678

Scaffold Ga0308416_1000678


Overview

Basic Information
Taxon OID3300032049 Open in IMG/M
Scaffold IDGa0308416_1000678 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS60
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11816
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Candidatus Thermofonsia → Candidatus Thermofonsia Clade 3 → Candidatus Thermofonsia Clade 3 bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006252Metagenome / Metatranscriptome377Y
F012577Metagenome / Metatranscriptome279Y
F014738Metagenome / Metatranscriptome260Y
F016100Metagenome / Metatranscriptome249Y
F037517Metagenome / Metatranscriptome167Y

Sequences

Protein IDFamilyRBSSequence
Ga0308416_100067811F006252GGAGMLRSFEEQAAFGLPYERVIAQAAAVLLYPHRLGLELARMGEYSPLDFLLLDSGQPIAALEVKRRSVRSDTYRTTILPQSVVDAARRLTIPTYAAILFTDGLAIFDVLRTPSRVRWLRTRRGTLRKHREYDISERLVKVEEVHQRQRRSA
Ga0308416_10006782F037517GGAGGMRVRQIGTLVFDANTNIVVDANNQDAPGIGFNVNTLFDPQPFSVEIAFRRPTRLVALNAASALARELHSYAQRRQDGRLAVAGGALVVAEDAAGNASLRSYLRDGTVTLLSVETTSTGVIARVRVTGTLVNSFLDYTSTYNFFQRIVPYERRVIALPGLSDAYLYRHWFDCYIYNANGLYNALFAVEELESATRTSRILAINPANVTSGITLQNWNAGWQTLTRAAFSSATSGTITYNVTTVNPKDVYRLFVEIFCPTTPSSNARYIVSWNGQPQIAETITGDRSWYAPALFVHHNTTVSLTLEIQNVPIGTLVMPLVLLPTDGVSVWSVITPPTLQSFNVRDLQNTLSMPFETNPPGTVYGAPGFISSRYIAVFNGVMSTTITNASTDLGVHSYRIEPAAFA
Ga0308416_10006783F012577AGGAGMLVAITKPHQQFPVPLTVADYEFSTSDDGDERGRVTLPPIYARSGVMTQIGDELIVYCTQLSRTVWRGQIERIEEARDGSITWHALGFGALQRDARISVVQNMYDMSRWQPVGSGFMTGSGYDSRGDLWEYEVVATGGFPHILIRTKKAFTITPATLFFLVYLYDQPERYATITTNERLTVFSVFISGLADGVWVAPVTAIPQPNAYTLTLGTFTSIGASGTVTASNCYGWVIGVRAAGVETVPGTTAVMFLTGINDLSSGGVNAQALSTALIERGGCCDVFLPSSADVRIAKPDANLRDIIEQSLVVSVRYHRKRFLRDRPRPTIDFRTDSTLVWRFPETMRVVDISKAPSRIFAQYRGYWTDHLTTTTTIQSLESRRQLARRVASVGEYGSKALAETRRNEAAIALDRQIAPITVELDNSRYELMTREGVTVPNWAADVSDYVIVQNYYRNAKITSRVITRERTTYTVSFNPDDFVTALR
Ga0308416_10006787F014738GGAGGMKLEVLLMISAFALALVHPDAAQVAATAVVLLLVTRIERGRRERKKKSAPATC
Ga0308416_10006789F016100AGGAGGMVISVRVERFKEYSELMRVVSRSEKTPATNKDIIRPLNYELLVGSHLPEPDWYRLGALVVALFRGFAVVDVEVWQNDFGVWIADSFIEIGRRHRLRRGEGATPVEAFIELIYHIQRY
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