NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308416_1002157

Scaffold Ga0308416_1002157


Overview

Basic Information
Taxon OID3300032049 Open in IMG/M
Scaffold IDGa0308416_1002157 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS60
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6270
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002978Metagenome / Metatranscriptome516Y
F059548Metagenome / Metatranscriptome133N
F069556Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0308416_10021571F069556N/AGAEWRADVRQVARDGVAAVARYLTTDGIAGASCEVASPAAKVPAGRAYPQLLYDYGRFRSSVDAALIYEYAAALHGVHHLTVSPRLRRLYDFTDPASGWDGISDDDILALLNSDEWLSIVEAGEERNLLDDLARMR
Ga0308416_100215715F059548AGGGGGMPTRREDALWSVVHRRAMHLRALLDGLDGVDVSITYELDYYPYAIVDLLL
Ga0308416_10021579F002978AGGVSEVGVRSWRVTIVPWADRRLWFIQARRGRRIVWGVVYDSADPDSVALARRAIATLRAAGADCSSLPSPLPAAGGQEP
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