NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308416_1002243

Scaffold Ga0308416_1002243


Overview

Basic Information
Taxon OID3300032049 Open in IMG/M
Scaffold IDGa0308416_1002243 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS60
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6120
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (61.54%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000642Metagenome / Metatranscriptome965Y
F000855Metagenome / Metatranscriptome859Y
F002372Metagenome / Metatranscriptome566Y
F076977Metagenome / Metatranscriptome117N

Sequences

Protein IDFamilyRBSSequence
Ga0308416_10022431F076977N/AYDVFVDSPYARGEMVELPARMQFLRDGSGRPTIRLYVDEGVR
Ga0308416_100224312F000642GAGGVQEISIALALCAVGAAVWYMRRREAGAGRVRGWLLLYDDLGGWRALPAVYGDSGIVSDGVTYPASLPALRAGRELVWVARCESAALIEHQALERARESAALASLWRGGGQWLDFLRVAGVVLPAVFAYFTWAQVSALQSLVAQILALVGDK
Ga0308416_10022432F002372AGGGGGMPTRREDALWSVVHRRASHLRALLDGLDDVDVSIAYELHYYPYAVVELLRVRDDAPPLVLRSVYVQANRQWEYHSEFALRVVEAALQLVHEYRADPSLGGAEAVWA
Ga0308416_10022439F000855GAGGMEWLEDFFSKIVGWLDEVSAGVHNGVIVWINSLIDIWNGWMDSLLHPAQAMPSIPALRWVVDWLSNLVDYTRLMYMLVDYVAYAQIVQQALIAQLTIVAVGLGFRAWLVIRRIVLVS
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